progress parameter that you can pass
htt::progress() to get progress information; especially
useful for long running queries (#124)dplyr::data_frame with
dplyr::tibble (#126)preserve_exact_body_bytes for tests for
plosabstract and plosfigtabcaps to avoid non-ascii text problems on
debian clang devel (#125)searchplos() and all wrapper fxns to
explain that internal pagination is used, but that users can do their
own pagination if they like (#122)searchplos() and all wrapper fxns.
large numbers were being passed as scientific notation, fixed now
(#123)vcr and webmockr packages
for unit test stubbinghighbrow() open pages with
https://doi.org instead of http://dx.doi.org
(#117)"Looping - printing progress ..." from
searchplos() (#120)searchplos(): were
accidentally dropping fq statements if more than 1, woopsy
(#121)solrium for under the hood Solr interaction
instead of solr package (#106)facetplos,
searchplos, and highplos lose parameter
verbose, and gain parameters error and
proxy for changing how verbose error reporting is, and for
setting proxy details, respectively.crul instead of httr for HTTP
requests (#110)XML with xml2 (#112)citations function for PLOS rich citations is defunct
as the service is gone (#113)tm dropped from Enhances (#111)content-type check for
plos_fulltext() function. XML can be either
application/xml or text/xml (#108)random parameter from
citations() function as it’s no longer available in the API
(#103)dplyr::rbind_all() for
dplyr::bind_rows() (#105)full_text_urls() now gives back NA when
DOIs for annotations are given, which can be easily removed.full_text_urls() function to create full text
URLs for PLOS Clinical Trials correctly (#104)ggplot2 from Depends to Imports,
and using @importFrom for ggplot2 functions,
now all imports are using @importFrom (#99)httr::content() to parse manually, and use
explicit encoding of UTF-8 (#102)solr dependency to require version
v0.1.6 or less (#94)plos_fulltext()
to avoid unicode problems (#93)utils,
stats, and methods packages (#90)httr v1 that broke
rplos when length 0 list passed to query
parameter (#89)citations() for querying the PLOS Rich
Citations API (http://api.richcitations.org/) (#88)vignettes/figure to .Rbuildignore as
requested by CRAN admin (#87)searchplos() now returns a list of length two,
meta and data, and meta is a
data.frame of metadata for the search.RCurl,
data.table, googleVis,
assertthat, RJSONIO, and stringr
(#79) (#82) (#84)dplyr.jsonlite from Suggests to Imports. Replaces use
of RJSONIO. (#80)crossref() now defunct. See package
rcrossref https://github.com/ropensci/rcrossref. (#83)highplos() now uses solr::solr_highlight()
to do highlight searches.searchplos(), plosabstract(), and other
functions that wrap searchplos() now use ...
to pass in curl options to httr::GET(). You’ll now get an
error on using callopts parameter.isocodes.plosword() and
plot_throughtime() to have far less code, uses
httr now instead of RCurl, but to the user,
everything should be the same.rplos behavior, and how to make them match, or
match more closely (#76)?rplos to go to
help page.searchplos() that are now
not working for some unknown reason. (#81)limit=0, we still gave back
data, this is fixed, and now the meta slot given back, and
the data slot gives an NA (#85)asc or desc incorrectly with the
sort parameter. See the check_response()
function
https://github.com/ropensci/rplos/blob/master/tests/testthat/test-check_response.R
for examples.facetplos() and highplos()
using the solr R wrapper to the Solr indexing engine. The
PLOS API just exposes the Solr endpoints, so we can use the general Solr
wrapper package solr to allow more flexible Solr
searching.highbrow() to visualize highlighting
results in a browser.plos_fulltext() to get full text xml of
PLOS articles. Helper function full_text_urls() constructs
the URL’s for full text xml.check_response() to check responses from
the PLOS API, deals with capturing server error messages, and checking
for correct content type, etc.crossref_r() as we are working on a
package for the CrossRef API.searchplos(),
plosauthor(), plosfigtabcaps(),
plossubject(), and plostitle() were changed to
match closer the Solr parameter names. terms to
q. fields to fl.
toquery to fq.fieldsreturndf parameter is gone from
searchplos(), plosauthor(),
plosfigtabcaps(), plossubject(), and
plostitle(). You can easily get raw JSON, etc. data using
the solr package.httr instead of RCurl in
plosviews() function.plosabstract,
plosauthor, plosfigtabcaps,
plossubject, and plostitle, that search
specifically within those sections of papers now wrap
searchplos, so they should behave the same way.The almdateupdated function has been deprecated -
use almupdated instead.
The articlelength function has been deprecated -
didn’t see the usefulness any longer.
In general simplified and prettified code.
Changed from using RCurl to httr in many functions, but not all.
Added more examples for many functions.
Added three internal functions: concat_todf,
addmissing, and getkey.
Added Karthik Ram as a package author.
All url arguments in functions put inside functions
as they are not likely to change that often.
Fixed crossref function, and added more
examples.
The alm function (previously
almplosallviews) gains many ### new features: now allows up
to 50 DOIs per call; you can specify the source you want to get alm data
from as an argument; you can specify the year you want to get alm data
from as an argument.
Added the plosfields data file to get all the possible fields to use in function calls.
almplosallviews changed to
alm.
almplotallviews changed to
almplot.
almevents added to specifically search and get
detailed events data for a specific source or N sources.
crossref_r gets 20 random DOIs from
Crossref.org.
Added package startup message.
journalnamekey function to get the short name keys
for each PLoS Journal.
ALM functions (any functions starting with alm) received updated arguments/parameters according to the ALM API version 3.0 changes.
Added tests.
almplosallviews now outputs different output - two
data.frames, one total metrics (summed across time), and history (for
metrics for each time period specified in the search)
crossref function returns R’s native bibtype format.
See examples in crossref function documentation
almpub changed to almdatepub
changed help file rplos to help - use
help(‘rplos’) in R
changed URL from http://ropensci.org/ to https://github.com/ropensci/rplos
added sleep argument to plosallviews function to
allow pauses between API calls when running plosallviews in
a loop - this is an attempt to limit hitting the PLoS API too
hard
various other fixed to functions
more examples added to some functions
journalnamekey to get short keys for
journals to use in searching for specific journals