An implementation of the Uniform Manifold Approximation and Projection dimensionality reduction by McInnes et al. (2018) <arXiv:1802.03426>. It also provides means to transform new data and to carry out supervised dimensionality reduction. An implementation of the related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also provided. This is a complete re-implementation in R (and C++, via the 'Rcpp' package): no Python installation is required. See the uwot website (<https://github.com/jlmelville/uwot>) for more documentation and examples.
Version: | 0.1.14 |
Depends: | Matrix |
Imports: | Rcpp, methods, FNN, RcppAnnoy (≥ 0.0.17), irlba |
LinkingTo: | Rcpp, RcppProgress, RcppAnnoy, dqrng |
Suggests: | testthat, covr, bigstatsr, RSpectra |
Published: | 2022-08-22 |
Author: | James Melville [aut, cre], Aaron Lun [ctb], Mohamed Nadhir Djekidel [ctb], Yuhan Hao [ctb] |
Maintainer: | James Melville <jlmelville at gmail.com> |
BugReports: | https://github.com/jlmelville/uwot/issues |
License: | GPL (≥ 3) |
URL: | https://github.com/jlmelville/uwot |
NeedsCompilation: | yes |
Materials: | NEWS |
CRAN checks: | uwot results |
Reference manual: | uwot.pdf |
Package source: | uwot_0.1.14.tar.gz |
Windows binaries: | r-devel: uwot_0.1.14.zip, r-release: uwot_0.1.14.zip, r-oldrel: uwot_0.1.14.zip |
macOS binaries: | r-release (arm64): uwot_0.1.14.tgz, r-oldrel (arm64): uwot_0.1.14.tgz, r-release (x86_64): uwot_0.1.14.tgz, r-oldrel (x86_64): uwot_0.1.14.tgz |
Old sources: | uwot archive |
Reverse imports: | bbknnR, celda, CiteFuse, ClustAssess, embed, EmbedSOM, fastTopics, HDStIM, iCellR, infinityFlow, MOFA2, mumosa, musicatk, mxnorm, pipeComp, POMA, rliger, scater, sccore, scDHA, scROSHI, Seurat, symphony, WormTensor |
Reverse suggests: | bundle, CATALYST, celltrackR, conos, curatedMetagenomicData, densvis, DepecheR, doc2vec, dyndimred, dynplot, Evacluster, FLAMES, ggspavis, graphlayouts, healthyR, healthyR.ai, iSEEu, miloR, netSmooth, pagoda2, ProjectionBasedClustering, SCArray, SCIBER, scp, SingleCellMultiModal, slingshot, solitude, standR, textplot, tidybulk, tidySingleCellExperiment, topicmodels.etm, TreeDist |
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