The implemented methods reach out to scientists that seek to estimate multiplicity of infection (MOI) and lineage (allele) frequencies and prevalences at molecular markers using the maximum-likelihood method described in Schneider (2018) <doi:10.1371/journal.pone.0194148>, and Schneider and Escalante (2014) <doi:10.1371/journal.pone.0097899>. Users can import data from Excel files in various formats, and perform maximum-likelihood estimation on the imported data by the package's moimle() function.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.3.0) |
| Imports: | XLConnect (≥ 0.2-15), rJava (≥ 0.9-10), Rdpack (≥ 0.10-1), Rmpfr (≥ 0.7-1) |
| Suggests: | knitr, rmarkdown |
| Published: | 2020-01-10 |
| Author: | Meraj Hashemi [cre, aut, com], Kristan Schneider [aut, ths] |
| Maintainer: | Meraj Hashemi <mhashemi at hs-mittweida.de> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | MLMOI results |
| Reference manual: | MLMOI.pdf |
| Vignettes: |
Standard Ambiguity Codes Data Import Check-list Examples Arguments of Import Function |
| Package source: | MLMOI_0.1.1.tar.gz |
| Windows binaries: | r-devel: MLMOI_0.1.1.zip, r-release: MLMOI_0.1.1.zip, r-oldrel: MLMOI_0.1.1.zip |
| macOS binaries: | r-release (arm64): MLMOI_0.1.1.tgz, r-oldrel (arm64): MLMOI_0.1.1.tgz, r-release (x86_64): MLMOI_0.1.1.tgz, r-oldrel (x86_64): MLMOI_0.1.1.tgz |
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