RUVIIIC: RUV-III-C

Variations of Remove Unwanted Variation-III (RUV-III) known as RUV-III-C (RUV-III Complete). RUV-III performs normalisation using negative control variables and replication. RUV-III-C extends this method to cases where the data contains missing values, by applying RUV-III to complete subsets of the data. Originally designed for SWATH-MS proteomics datasets. Poulos et al. (2020) <doi:10.1038/s41467-020-17641-3>.

Version:	1.0.19
Depends:	R (≥ 3.5), RSpectra, progress
LinkingTo:	Rcpp, RcppEigen, RSpectra, RcppProgress
Suggests:	ruv, testthat
Published:	2021-04-23
Author:	Rohan Shah [aut, cre], Sean Peters [ctb], Qing Zhong [ctb], Children's Medical Research Institute [cph]
Maintainer:	Rohan Shah <rshah at cmri.org.au>
License:	MIT + file LICENSE
NeedsCompilation:	yes
SystemRequirements:	C++11
CRAN checks:	RUVIIIC results

Documentation:

Reference manual:

RUVIIIC.pdf

Downloads:

Package source:	RUVIIIC_1.0.19.tar.gz
Windows binaries:	r-devel: RUVIIIC_1.0.19.zip, r-release: RUVIIIC_1.0.19.zip, r-oldrel: RUVIIIC_1.0.19.zip
macOS binaries:	r-release (arm64): RUVIIIC_1.0.19.tgz, r-oldrel (arm64): RUVIIIC_1.0.19.tgz, r-release (x86_64): RUVIIIC_1.0.19.tgz, r-oldrel (x86_64): RUVIIIC_1.0.19.tgz
Old sources:	RUVIIIC archive

Linking:

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