biogram: N-Gram Analysis of Biological Sequences

Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.

Version: 1.6.3
Depends: R (≥ 3.0.0), slam
Imports: combinat, entropy, partitions
Suggests: ggplot2, knitr, testthat
Published: 2020-03-31
Author: Michal Burdukiewicz ORCID iD [cre, aut], Piotr Sobczyk [aut], Chris Lauber [aut], Dominik Rafacz [aut], Katarzyna Sidorczuk ORCID iD [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>
BugReports: https://github.com/michbur/biogram/issues
License: GPL-3
URL: https://github.com/michbur/biogram
NeedsCompilation: no
Citation: biogram citation info
Materials: README ChangeLog
CRAN checks: biogram results

Documentation:

Reference manual: biogram.pdf
Vignettes: biogram package - an overview

Downloads:

Package source: biogram_1.6.3.tar.gz
Windows binaries: r-devel: biogram_1.6.3.zip, r-release: biogram_1.6.3.zip, r-oldrel: biogram_1.6.3.zip
macOS binaries: r-release (arm64): biogram_1.6.3.tgz, r-oldrel (arm64): biogram_1.6.3.tgz, r-release (x86_64): biogram_1.6.3.tgz, r-oldrel (x86_64): biogram_1.6.3.tgz
Old sources: biogram archive

Reverse dependencies:

Reverse imports: AmpGram, AmyloGram, CancerGram

Linking:

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