caRpools: CRISPR AnalyzeR for Pooled CRISPR Screens
CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See <https://en.wikipedia.org/wiki/CRISPR> for more information on
CRISPR.
| Version: |
0.83 |
| Depends: |
R (≥ 3.1.0) |
| Imports: |
rmarkdown, VennDiagram, DESeq2, sm, biomaRt, seqinr, scatterplot3d, xlsx |
| Suggests: |
BiocGenerics, knitr, stringi |
| Published: |
2015-12-06 |
| Author: |
Jan Winter, Florian Heigwer |
| Maintainer: |
Jan Winter <jan.winter at dkfz-heidelberg.de> |
| BugReports: |
https://github.com/boutroslab/caRpools |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| URL: |
http://www.crispr-analyzer.de,
https://github.com/boutroslab/caRpools |
| NeedsCompilation: |
no |
| SystemRequirements: |
MAGeCK (=0.51, from
http://sourceforge.net/p/mageck/wiki/Home/), bowtie2
(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml) |
| CRAN checks: |
caRpools results |
Documentation:
Downloads:
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