ccRemover: Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Implements a method for identifying and removing
the cell-cycle effect from scRNA-Seq data. The description of the
method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing
the cell-cycle effect from single-cell RNA-Sequencing data. Submitted.
Different from previous methods, ccRemover implements a mechanism that
formally tests whether a component is cell-cycle related or not, and thus
while it often thoroughly removes the cell-cycle effect, it preserves
other features/signals of interest in the data.
| Version: |
1.0.4 |
| Depends: |
R (≥ 2.10.0) |
| Imports: |
stats, utils |
| Suggests: |
knitr, rmarkdown |
| Published: |
2017-08-19 |
| Author: |
Jun Li [aut, cre],
Martin Barron [aut] |
| Maintainer: |
Jun Li <jun.li at nd.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
ccRemover results |
Documentation:
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