Updated the DESCRIPTION to use single quotes for package name.
Deleted the extra word “into” in DESCRIPTION.
Deleted “| file LICENSE” in DESCRIPTION and the file.
Used Authors@R field in DESCRIPTION.
Added Rd-tag in possible_artifacts.Rd and rare_signatures.Rd.
Removed in the examples.
Wrapped examples that need packages in ‘Suggests’ in
if(requireNamespace("pkgname")){}.
Applied tidyverse style to existing code
Added new exported function possible_artifacts,
rare_signatures
GRCh37, GRCh38, mm9,
mm10 and rn6Used GRCh38 signatures as the default for SBS96 and DBS78 in
variable signature, COSMIC_v3.2,
COSMIC_v3.1 and COSMIC_v3.0
Removed genome level structure from variables
signature, COSMIC_v3.2,
COSMIC_v3.1 and COSMIC_v3.0
Removed argument cosmic_version from exported
function get_etiology
Added explanation for “-E” in function
SBS96_ID_to_SBS192_ID
Added exported package data variable signature,
etiology, COSMIC_v3.2,
COSMIC_v3.1 and COSMIC_v3.0
Added exported function get_etiology,
SBS96_ID_to_SBS192_ID and automated tests