episcan: Scan Pairwise Epistasis

Searching genomic interactions with linear/logistic regression in a high-dimensional dataset is a time-consuming task. This package provides some efficient ways to scan epistasis in genome-wide interaction studies (GWIS). Both case-control status (binary outcome) and quantitative phenotype (continuous outcome) are supported (the main references: 1. Kam-Thong, T., D. Czamara, K. Tsuda, K. Borgwardt, C. M. Lewis, A. Erhardt-Lehmann, B. Hemmer, et al. (2011). <doi:10.1038/ejhg.2010.196>. 2. Kam-Thong, T., B. Pütz, N. Karbalai, B. Müller-Myhsok, and K. Borgwardt. (2011). <doi:10.1093/bioinformatics/btr218>.)

Version:	0.0.1
Depends:	R (≥ 3.5.0)
Suggests:	testthat, knitr, rmarkdown
Published:	2018-09-14
Author:	Beibei Jiang and Benno Pütz
Maintainer:	Beibei Jiang <beibei_jiang at psych.mpg.de>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
CRAN checks:	episcan results

Documentation:

Reference manual:	episcan.pdf
Vignettes:	episcan

Downloads:

Package source:	episcan_0.0.1.tar.gz
Windows binaries:	r-devel: episcan_0.0.1.zip, r-release: episcan_0.0.1.zip, r-oldrel: episcan_0.0.1.zip
macOS binaries:	r-release (arm64): episcan_0.0.1.tgz, r-oldrel (arm64): episcan_0.0.1.tgz, r-release (x86_64): episcan_0.0.1.tgz, r-oldrel (x86_64): episcan_0.0.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=episcan to link to this page.