Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.
| Version: |
0.1.1 |
| Depends: |
R (≥ 3.4.0), Rcpp |
| Imports: |
dplyr, cowplot, tidyr, ggplot2, irlba, Matrix, methods, tibble, rlang |
| LinkingTo: |
Rcpp, RcppArmadillo, RcppProgress |
| Suggests: |
SingleCellExperiment, Seurat (≥ 4.1.1), testthat, knitr, rmarkdown |
| Published: |
2022-11-14 |
| Author: |
Ilya Korsunsky 
[cre, aut],
Nghia Millard
[aut],
Jean Fan [aut,
ctb],
Kamil Slowikowski
[aut, ctb],
Miles Smith [ctb],
Soumya Raychaudhuri
[aut] |
| Maintainer: |
Ilya Korsunsky <ilya.korsunsky at gmail.com> |
| License: |
GPL-3 |
| URL: |
software.broadinstitute.org/harmony |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
harmony results |