liayson: Linking Singe-Cell Transcriptomes Atween Contemporary Subpopulation Genomes

Given an RNA-seq derived cell-by-gene matrix and an DNA-seq derived copy number segmentation, LIAYSON predicts the number of clones present in a tumor, their size, the copy number profile of each clone and the clone membership of each single cell (Andor, N. & Lau, B., et al. (2018) <doi:10.1101/445932>).

Version:	1.0.5
Depends:	R (≥ 3.0)
Imports:	phangorn, RColorBrewer, ape, parallel, plyr, matlab, biomaRt, distances, arules, e1071, proxy, gplots, methods
Suggests:	mclust, fpc, NbClust, modeest, pastecs, vegan
Published:	2022-09-29
Author:	Noemi Andor
Maintainer:	Noemi Andor <liayson.scRNA.R at gmail.com>
License:	GPL-2
URL:	https://github.com/noemiandor/liayson
NeedsCompilation:	no
Materials:	NEWS
CRAN checks:	liayson results

Documentation:

Reference manual:	liayson.pdf
Vignettes:	liayson

Downloads:

Package source:	liayson_1.0.5.tar.gz
Windows binaries:	r-devel: liayson_1.0.5.zip, r-release: liayson_1.0.5.zip, r-oldrel: liayson_1.0.5.zip
macOS binaries:	r-release (arm64): liayson_1.0.5.tgz, r-oldrel (arm64): liayson_1.0.5.tgz, r-release (x86_64): liayson_1.0.5.tgz, r-oldrel (x86_64): liayson_1.0.5.tgz
Old sources:	liayson archive

Linking:

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