mbmixture: Microbiome Mixture Analysis
Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2019) <doi:10.1101/529040>.
| Version: | 0.2-5 |
| Depends: | R (≥ 3.1.0) |
| Imports: | stats, parallel, numDeriv |
| Suggests: | knitr, rmarkdown, testthat, devtools, roxygen2 |
| Published: | 2020-10-22 |
| Author: | Karl W Broman 
[aut, cre] |
| Maintainer: | Karl W Broman <broman at wisc.edu> |
| BugReports: | https://github.com/kbroman/mbmixture/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/kbroman/mbmixture |
| NeedsCompilation: | no |
| Citation: | mbmixture citation info |
| Materials: | README NEWS |
| CRAN checks: | mbmixture results |
Documentation:
| Reference manual: | mbmixture.pdf |
| Vignettes: |
R/mbmixture User Guide |
Downloads:
| Package source: | mbmixture_0.2-5.tar.gz |
| Windows binaries: | r-devel: mbmixture_0.2-5.zip, r-release: mbmixture_0.2-5.zip, r-oldrel: mbmixture_0.2-5.zip |
| macOS binaries: | r-release (arm64): mbmixture_0.2-5.tgz, r-oldrel (arm64): mbmixture_0.2-5.tgz, r-release (x86_64): mbmixture_0.2-5.tgz, r-oldrel (x86_64): mbmixture_0.2-5.tgz |
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