miLineage: Association Tests for Microbial Lineages on a Taxonomic Tree

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) <doi:10.1093/bioinformatics/btw804> and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

Version:	2.1
Depends:	R (≥ 3.1.1), MASS, data.table, geepack
Published:	2018-03-23
Author:	Zheng-Zheng Tang
Maintainer:	Zheng-Zheng Tang <tang at biostat.wisc.edu>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
CRAN checks:	miLineage results

Documentation:

Reference manual:

miLineage.pdf

Downloads:

Package source:	miLineage_2.1.tar.gz
Windows binaries:	r-devel: miLineage_2.1.zip, r-release: miLineage_2.1.zip, r-oldrel: miLineage_2.1.zip
macOS binaries:	r-release (arm64): miLineage_2.1.tgz, r-oldrel (arm64): miLineage_2.1.tgz, r-release (x86_64): miLineage_2.1.tgz, r-oldrel (x86_64): miLineage_2.1.tgz
Old sources:	miLineage archive

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