Reconstructs perfect phylogeny at a user-given focal point and to depict and test association in a genomic region based on the reconstructed partitions. Charith B Karunarathna and Jinko Graham (2019) <bioRxiv:10.1101/674523>.
| Version: | 0.2.1 |
| Depends: | R (≥ 3.4.0) |
| Imports: | ape, phytools, Rcpp (≥ 0.12.16) |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | HHG, dendextend, vcfR, R.rsp |
| Published: | 2021-03-08 |
| Author: | Charith Karunarathna and Jinko Graham |
| Maintainer: | Charith Karunarathna <ckarunar at sfu.ca> |
| License: | GPL-2 | GPL-3 [expanded from: GNU General Public License] |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | perfectphyloR results |
| Reference manual: | perfectphyloR.pdf |
| Vignettes: |
perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data |
| Package source: | perfectphyloR_0.2.1.tar.gz |
| Windows binaries: | r-devel: perfectphyloR_0.2.1.zip, r-release: perfectphyloR_0.2.1.zip, r-oldrel: perfectphyloR_0.2.1.zip |
| macOS binaries: | r-release (arm64): perfectphyloR_0.2.1.tgz, r-oldrel (arm64): perfectphyloR_0.2.1.tgz, r-release (x86_64): perfectphyloR_0.2.1.tgz, r-oldrel (x86_64): perfectphyloR_0.2.1.tgz |
| Old sources: | perfectphyloR archive |
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