polyqtlR: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in
autopolyploid bi-parental F1 populations.
For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated.
Significance thresholds, exploring QTL allele effects and visualising results are provided.
For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
| Version: |
0.0.9 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
abind, doParallel, foreach, Hmisc, knitr, nlme, RColorBrewer, Rcpp (≥ 0.12.19), reshape2 |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
igraph, mappoly (≥ 0.3.0), polymapR, rmarkdown |
| Published: |
2022-02-02 |
| Author: |
Peter Bourke [aut, cre],
Christine Hackett [ctb],
Chris Maliepaard [ctb],
Geert van Geest [ctb],
Roeland Voorrips [ctb],
Johan Willemsen [ctb] |
| Maintainer: |
Peter Bourke <pbourkey at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
yes |
| SystemRequirements: |
C++11 |
| In views: |
Agriculture |
| CRAN checks: |
polyqtlR results |
Documentation:
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