pureseqtmr: Predict Transmembrane Protein Topology
Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.
| Version: | 1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ggplot2, plyr, rappdirs, stringr, tibble |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2020-07-30 |
| Author: | Richèl J.C. Bilderbeek
 [aut, cre] |
| Maintainer: | Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: | https://github.com/richelbilderbeek/pureseqtmr |
| License: | GPL-3 |
| URL: | https://github.com/richelbilderbeek/pureseqtmr |
| NeedsCompilation: | no |
| SystemRequirements: | PureseqTM (https://github.com/PureseqTM/pureseqTM_package) |
| CRAN checks: | pureseqtmr results |
Documentation:
| Reference manual: | pureseqtmr.pdf |
| Vignettes: |
Demo |
Downloads:
| Package source: | pureseqtmr_1.2.tar.gz |
| Windows binaries: | r-devel: pureseqtmr_1.2.zip, r-release: pureseqtmr_1.2.zip, r-oldrel: pureseqtmr_1.2.zip |
| macOS binaries: | r-release (arm64): pureseqtmr_1.2.tgz, r-oldrel (arm64): pureseqtmr_1.2.tgz, r-release (x86_64): pureseqtmr_1.2.tgz, r-oldrel (x86_64): pureseqtmr_1.2.tgz |
Linking:
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