refdb: A DNA Reference Library Manager
Reference database manager offering a set of functions to import, organize, clean, filter, audit and export reference genetic data. Provide functions to download sequence data from Bold Systems (<https://www.boldsystems.org/>) and NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>. Designed as an environment for semi-automatic and assisted construction of reference databases and to improve standardization and repeatability in barcoding and metabarcoding studies.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | tibble, readr, dplyr, stringr, tidyr, rentrez, bold, taxize, xml2, bioseq, ape, igraph, ggplot2, ggraph, yaml, rlang, rmarkdown, leaflet |
| Suggests: | testthat (≥ 3.0.0), covr, DT, knitr, forcats |
| Published: | 2022-09-22 |
| Author: | Francois Keck 
[aut, cre, cph] |
| Maintainer: | Francois Keck <francois.keck at gmail.com> |
| BugReports: | https://github.com/fkeck/refdb/issues |
| License: | GPL-3 |
| URL: | https://fkeck.github.io/refdb/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | refdb results |
Documentation:
| Reference manual: | refdb.pdf |
| Vignettes: |
Introduction to the refdb package Downloading and combining data from NCBI Genbank and BOLD |
Downloads:
| Package source: | refdb_0.1.1.tar.gz |
| Windows binaries: | r-devel: refdb_0.1.1.zip, r-release: refdb_0.1.1.zip, r-oldrel: refdb_0.1.1.zip |
| macOS binaries: | r-release (arm64): refdb_0.1.1.tgz, r-oldrel (arm64): refdb_0.1.1.tgz, r-release (x86_64): refdb_0.1.1.tgz, r-oldrel (x86_64): refdb_0.1.1.tgz |
| Old sources: | refdb archive |
Linking:
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