seqCBS: Copy Number Profiling using Sequencing and CBS

This is a method for DNA Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based on non-homogeneous Poisson Processes with change point models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point-wise Bayesian Confidence Interval and model selection method for the change-point model. A case and a control sample reads (normal and tumor) are required.

Version:	1.2.1
Depends:	R (≥ 2.10), clue
Published:	2019-04-13
Author:	Jeremy J. Shen, Nancy R. Zhang
Maintainer:	Jeremy J. Shen <jeremyjshen at gmail.com>
License:	GPL-2
NeedsCompilation:	yes
CRAN checks:	seqCBS results

Documentation:

Reference manual:

seqCBS.pdf

Downloads:

Package source:	seqCBS_1.2.1.tar.gz
Windows binaries:	r-devel: seqCBS_1.2.1.zip, r-release: seqCBS_1.2.1.zip, r-oldrel: seqCBS_1.2.1.zip
macOS binaries:	r-release (arm64): seqCBS_1.2.1.tgz, r-oldrel (arm64): seqCBS_1.2.1.tgz, r-release (x86_64): seqCBS_1.2.1.tgz, r-oldrel (x86_64): seqCBS_1.2.1.tgz
Old sources:	seqCBS archive

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