Implements statistical inference for systems of ordinary differential equations, that uses the integral-matching criterion and takes advantage of the separability of parameters, in order to obtain initial parameter estimates for nonlinear least squares optimization. Dattner & Yaari (2018) <arXiv:1807.04202>. Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>. Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.4.0) |
| Imports: | deSolve, quadprog, pracma |
| Suggests: | parallel, Rcgmin, Rvmmin, R.rsp, knitr, testthat |
| Published: | 2020-05-14 |
| Author: | Itai Dattner [aut], Rami Yaari [aut, cre] |
| Maintainer: | Rami Yaari <ramiyaari at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | simode results |
| Reference manual: | simode.pdf |
| Vignettes: |
simode: Statistical inference of ODEs using separable integral-matching |
| Package source: | simode_1.2.0.tar.gz |
| Windows binaries: | r-devel: simode_1.2.0.zip, r-release: simode_1.2.0.zip, r-oldrel: simode_1.2.0.zip |
| macOS binaries: | r-release (arm64): simode_1.2.0.tgz, r-oldrel (arm64): simode_1.2.0.tgz, r-release (x86_64): simode_1.2.0.tgz, r-oldrel (x86_64): simode_1.2.0.tgz |
| Old sources: | simode archive |
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