tidyestimate: A Tidy Implementation of 'ESTIMATE'
The 'ESTIMATE' package infers tumor purity from expression data as a
function of immune and stromal infiltrate, but requires writing of intermediate
files, is un-pipeable, and performs poorly when presented with modern datasets
with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of
'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
| Version: |
1.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
utils, grDevices, graphics, glue, dplyr, stats, rlang, ggrepel, ggplot2 |
| Suggests: |
rmarkdown, knitr |
| Published: |
2021-09-09 |
| Author: |
Kai Aragaki  [aut,
cre],
Paul Roebuck [cph] (Copyright holder of ESTIMATE package),
Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm),
Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm),
Hoon Kim [aut] (Author of original ESTIMATE algorithm),
Roel Verhaak [aut] (Author of original ESTIMATE algorithm) |
| Maintainer: |
Kai Aragaki <aaragak1 at jhmi.edu> |
| BugReports: |
https://github.com/KaiAragaki/tidyestimate/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: |
see file COPYRIGHTS |
| URL: |
https://github.com/KaiAragaki/tidyestimate |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
tidyestimate results |
Documentation:
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