Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.
| Version: | 0.5.0 |
| Depends: | ape (≥ 5.0), limSolve (≥ 1.5.5.0) |
| Suggests: | lubridate, ggplot2, foreach, iterators, mgcv, knitr, rmarkdown |
| Published: | 2020-01-26 |
| Author: | Erik Volz [aut, cre] |
| Maintainer: | Erik Volz <erik.volz at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | treedater results |
| Reference manual: | treedater.pdf |
| Vignettes: |
H3N2 |
| Package source: | treedater_0.5.0.tar.gz |
| Windows binaries: | r-devel: treedater_0.5.0.zip, r-release: treedater_0.5.0.zip, r-oldrel: treedater_0.5.0.zip |
| macOS binaries: | r-release (arm64): treedater_0.5.0.tgz, r-oldrel (arm64): treedater_0.5.0.tgz, r-release (x86_64): treedater_0.5.0.tgz, r-oldrel (x86_64): treedater_0.5.0.tgz |
| Old sources: | treedater archive |
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