vegan3d is an R package of 3D plotting routines split apart from vegan. It can be used for dynamic plots based on rgl package, and for static 3D plots based on scatterplot3d package.
The package contains the following functions:
ordirgl with its support functions
orglpoints, orgltext,
orglsegments, orglellipse,
orglspider, orglcluster and
orglspantree. These require rgl package
and provide dynamic ordination graphics.
rgl based support functions
rgl.isomap to display isomap results, and
rgl.renyiaccum to display renyiaccum
results.
ordiplot3d for static 3D ordination diagrams. This
requires scatterplot3d package.
orditree3d and ordirgltree functions to
display a coloured dendrogram tree over a 2D plane. The first is a
static function based on scatterplot3d and the latter a
dynamic spinnable plot based on rgl. The method was
initially designed for showing dendrograms over ordination plane but it
can use other planes, for instance a map of locations of
points.