yaps: Track Estimation using YAPS (Yet Another Positioning Solver)
Estimate tracks of animals tagged with acoustic transmitters. 'yaps' was introduced in 2017 as a transparent open-source tool to estimate positions of fish (and other aquatic animals) tagged with acoustic transmitters. Based on registrations of acoustic transmitters on hydrophones positioned in a fixed array, 'yaps' enables users to synchronize the collected data (i.e. correcting for drift in the internal clocks of the hydrophones/receivers) and subsequently to estimate tracks of the tagged animals. The paper introducing 'yaps' is available in open access at Baktoft, Gjelland, Økland & Thygesen (2017) <doi:10.1038/s41598-017-14278-z>. Also check out our cookbook with a completely worked through example at Baktoft, Gjelland, Økland, Rehage, Rodemann, Corujo, Viadero & Thygesen (2019) <doi:10.1101/2019.12.16.877688>. Additional tutorials will eventually make their way onto the project website at <https://baktoft.github.io/yaps/>.
| Version: |
1.2.5 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
circular, cowplot, data.table, ggplot2, ggrepel, nloptr, plyr, Rcpp, reshape2, splusTimeSeries, stats, tictoc, TMB, viridis, zoo |
| LinkingTo: |
Rcpp, TMB, RcppEigen |
| Suggests: |
caTools, covr, knitr, rmarkdown, testthat (≥ 2.1.0), vdiffr |
| Published: |
2021-04-13 |
| Author: |
Henrik Baktoft 
[cre, aut],
Karl Gjelland
[aut],
Uffe H. Thygesen
[aut],
Finn Økland [aut] |
| Maintainer: |
Henrik Baktoft <hba at aqua.dtu.dk> |
| BugReports: |
https://github.com/baktoft/yaps/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/baktoft/yaps, https://baktoft.github.io/yaps/ |
| NeedsCompilation: |
yes |
| Citation: |
yaps citation info |
| Materials: |
README NEWS |
| CRAN checks: |
yaps results |
Documentation:
Downloads:
Linking:
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