exDE: Extensible Differential Equations for Mosquito-Borne Pathogen Modeling

Provides tools to set up modular ordinary and delay differential equation models for mosquito-borne pathogens, focusing on malaria. Modular design is achieved by S3 dispatch on parameter lists for each component which is used to compute the full set of differential equations which may be solved using any of the packages for numerical simulation of differential equations in R. The methods implemented by this package are described in Wu et al. (2022) <doi:10.1101/2022.11.07.22282044>.

Version:	1.0.0
Imports:	deSolve, expm, MASS
Suggests:	ggplot2, data.table, knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2022-11-18
Author:	Sean L. Wu [aut, cre], David L. Smith [aut]
Maintainer:	Sean L. Wu <slwood89 at gmail.com>
BugReports:	https://github.com/dd-harp/exDE/issues
License:	MIT + file LICENSE
URL:	https://dd-harp.github.io/exDE/
NeedsCompilation:	no
Citation:	exDE citation info
Materials:	README NEWS
CRAN checks:	exDE results

Documentation:

Reference manual:	exDE.pdf
Vignettes:	Contributing Ross-Macdonald Adult Mosquito Model Basic Competition Aquatic Mosquito Model Trace (exogenously forced) Aquatic Mosquito Model 5-3-4 Example Hybrid MoI (Multiplicity of Infection) Human Model SIP (Susceptible-Infected-Prophylaxis) Human Model SIS (Susceptible-Infected-Susceptible) Human Model Spatial Metrics ITN-based Vector Control

Downloads:

Package source:	exDE_1.0.0.tar.gz
Windows binaries:	r-devel: exDE_1.0.0.zip, r-release: exDE_1.0.0.zip, r-oldrel: exDE_1.0.0.zip
macOS binaries:	r-release (arm64): exDE_1.0.0.tgz, r-oldrel (arm64): exDE_1.0.0.tgz, r-release (x86_64): exDE_1.0.0.tgz, r-oldrel (x86_64): exDE_1.0.0.tgz

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